miRBase entry: zma-MIR167d

Stem-loop zma-MIR167d


Accession
MI0001477
Description
Zea mays zma-MIR167d precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
29 open access papers mention zma-MIR167d
(128 sentences)

Sequence

22674 reads, 48117 reads per million, 15 experiments
ugcccaagggaacgagUGAAGCUGCCAGCAUGAUCUAgcucugagugaucacccgaaaaagaacaauaguucuagguggucaugccuugcuaGGUCAUGCUGCUGCAGCCUCACUucuucccgucguugggca
((((((((((((.((((((.(((((((((((((((((((.....(((((((((......(((((....))))).))))))))).....))))))))))))))..))))).)))))).)))))....)))))))

Structure
       ----     c      A     --              ucuga         cgaaaa     a 
ugcccaa    gggaa gagUGA GCUGC  CAGCAUGAUCUAgc     gugaucacc      agaac a
|||||||    ||||| |||||| |||||  ||||||||||||||     |||||||||      |||||  
acggguu    cccuu uUCACU CGACG  GUCGUACUGGaucg     uacuggugg      ucuug u
       gcug     c      C     UC              uuccg         -----a     a 


Annotation confidence Not enough data
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Genome context
chr1: 292918639-292918771 [-]

Database links

Mature zma-miR167d-5p

Accession MIMAT0001372
Description Zea mays zma-miR167d-5p mature miRNA
Sequence 17 - UGAAGCUGCCAGCAUGAUCUA - 37
Evidence experimental
Illumina [2]
Database links

Mature zma-miR167d-3p

Accession MIMAT0015144
Description Zea mays zma-miR167d-3p mature miRNA
Sequence 93 - GGUCAUGCUGCUGCAGCCUCACU - 115
Evidence experimental
Illumina [2]

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716