miRBase entry: zma-MIR167c

Stem-loop zma-MIR167c


Accession
MI0001478
Description
Zea mays zma-MIR167c precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
29 open access papers mention zma-MIR167c
(126 sentences)

Sequence

22730 reads, 48528 reads per million, 15 experiments
ugcccaagggaacgagUGAAGCUGCCAGCAUGAUCUAgcucggagugaucacgcgaggagaacaauagcucgagguggucaugccuugcuaGAUCAUGCUGUGGCAGCCUCACUucuucccguccuugggca
((((((((((((.((((((.(((((((((((((((((((..((.((((((((.((((...........))))..)))))))).))..))))))))))))..))))))).)))))).)))))....)))))))

Structure
       ----     c      A       --            uc  a        -g    gaga 
ugcccaa    gggaa gagUGA GCUGCCA  GCAUGAUCUAgc  gg gugaucac  cgag    a
|||||||    ||||| |||||| |||||||  ||||||||||||  || ||||||||  ||||    c
acggguu    cccuu uUCACU CGACGGU  CGUACUAGaucg  cc uacuggug  gcuc    a
       ccug     c      C       GU            uu  g        ga    gaua 


Annotation confidence High
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Genome context
chr5: 4414244-4414375 [+]

Database links

Mature zma-miR167c-5p

Accession MIMAT0001373
Description Zea mays zma-miR167c-5p mature miRNA
Sequence 17 - UGAAGCUGCCAGCAUGAUCUA - 37
Evidence experimental
Illumina [2]
Database links

Mature zma-miR167c-3p

Accession MIMAT0015145
Description Zea mays zma-miR167c-3p mature miRNA
Sequence 92 - GAUCAUGCUGUGGCAGCCUCACU - 114
Evidence experimental
Illumina [2]
Database links

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716