miRBase entry: zma-MIR166i

Stem-loop zma-MIR166i


Accession
MI0001485
Description
Zea mays zma-MIR166i precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
32 open access papers mention zma-MIR166i
(194 sentences)

Sequence

116060 reads, 353816 reads per million, 10 experiments
ggGGAAUGUCGUCUGGCGCGAGAccguaccagacgacgugcucucucggucgucggacggucUCGGACCAGGCUUCAUUCCCc
((((((((..((((((..(((((((((.((.((((((...........)))))))))))))))))..))))))..))))))))

Structure
        UC      CG         a  a      gugc 
ggGGAAUG  GUCUGG  CGAGAccgu cc gacgac    u
||||||||  ||||||  ||||||||| || ||||||    c
cCCCUUAC  CGGACC  GCUcuggca gg cugcug    u
        UU      AG         -  -      gcuc 


Annotation confidence High
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Genome context
chr1: 244940015-244940097 [+]

Database links

Mature zma-miR166i-5p

Accession MIMAT0015149
Description Zea mays zma-miR166i-5p mature miRNA
Sequence 3 - GGAAUGUCGUCUGGCGCGAGA - 23
Evidence experimental
Illumina [2]

Mature zma-miR166i-3p

Accession MIMAT0001379
Description Zea mays zma-miR166i-3p mature miRNA
Sequence 63 - UCGGACCAGGCUUCAUUCCC - 82
Evidence experimental
Illumina [2]
Database links

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716