Stem-loop zma-MIR166f

Accession

MI0001486

Description

Zea mays zma-MIR166f precursor miRNA

Literature search

33 open access papers mention zma-MIR166f
(192 sentences)

Sequence

147175 reads, 14989.0 reads per million, 111 experiments

gGGGAAUGACGUCCGGUCCGAACaagccacggcugcugcugcgcuaccgccgcggcuUCGGACCAGGCUUCAUUCCCC
(((((((((.(((.(((((((...((((.((((.(..((...))..).)))).))))))))))).))).)))))))))

Structure

         C   C       ACa    a    u cu  u 
gGGGAAUGA GUC GGUCCGA   agcc cggc g  gc  
||||||||| ||| |||||||   |||| |||| |  || g
CCCCUUACU CGG CCAGGCU   ucgg gccg c  cg  
         U   A       ---    c    c au  c 

Annotation confidence High

Genome context

5: 8453343-8453420 [+]

Mature zma-miR166f-5p

• Accession: MIMAT0056564
• Description: Zea mays zma-miR166f-5p mature miRNA
• Sequence: 2 - GGGAAUGACGUCCGGUCCGAAC - 23
• Evidence: experimental ; unknown

Mature zma-miR166f-3p

• Accession: MIMAT0001380
• Description: Zea mays zma-miR166f-3p mature miRNA
• Sequence: 58 - UCGGACCAGGCUUCAUUCCCC - 78
• Evidence: not_experimental

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360