miRBase entry: zma-MIR166b

Stem-loop zma-MIR166b


Accession
MI0001488
Description
Zea mays zma-MIR166b precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
33 open access papers mention zma-MIR166b
(199 sentences)

Sequence

116142 reads, 349995 reads per million, 5 experiments
guGGAAUGUUGUCUGGUUCAAGGucuugcuwuccgauuugaggaugauccaugcuugcauguguaguuuuuuuuguuccucagaucuacaagaucUCGGACCAGGCUUCAUUCCCc
..((((((..(((((((((.((((((((......((((((((((........(((.((....))))).........))))))))))..)))))))).)))))))))..))))))..

Structure
gu      UU         A        cuwucc          -ugauccau   u  a 
  GGAAUG  GUCUGGUUC AGGucuug      gauuugagga         gcu gc u
  ||||||  ||||||||| ||||||||      ||||||||||         ||| ||  
  CCUUAC  CGGACCAGG Ucuagaac      cuagacuccu         uga ug g
cC      UU         C        ----au          uguuuuuuu   -  u 


Annotation confidence High
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Genome context
chr1: 226759256-226759371 [-]

Database links

Mature zma-miR166b-5p

Accession MIMAT0015151
Description Zea mays zma-miR166b-5p mature miRNA
Sequence 3 - GGAAUGUUGUCUGGUUCAAGG - 23
Evidence experimental
Illumina [3]
Database links

Mature zma-miR166b-3p

Accession MIMAT0001382
Description Zea mays zma-miR166b-3p mature miRNA
Sequence 96 - UCGGACCAGGCUUCAUUCCC - 115
Evidence experimental
Illumina [3]
Database links

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  3. PubMed ID: 14999285
    microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity
    "Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC"
    "Nature (2004) 428:84-88