Stem-loop zma-MIR166c

Accession

MI0001489

Description

Zea mays zma-MIR166c precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

32 open access papers mention zma-MIR166c
(193 sentences)

Sequence

116297 reads, 350268 reads per million, 4 experiments

ggGGAAUGUUGUCUGGCUCGAGGugcagaaacacgcagaucucaucgaggucgucuugguuguuguugaucUCGGACCAGGCUUCAUUCCCc
((((((((..((((((.(((((((.(((.((((..((((((((...))))))....))..)))).)))))))))).))))))..))))))))

Structure

        UU      C       g   a    cg  ----      a 
ggGGAAUG  GUCUGG UCGAGGu cag aaca  ca    gaucuc  
||||||||  |||||| ||||||| ||| ||||  ||    |||||| u
cCCCUUAC  CGGACC GGCUcua guu uugu  gu    cuggag  
        UU      A       -   g    ug  ucug      c 

Annotation confidence Not enough data

Genome context

chr4: 153858453-153858544 [+]

Mature zma-miR166c-5p

• Accession: MIMAT0015152
• Description: Zea mays zma-miR166c-5p mature miRNA
• Sequence: 3 - GGAAUGUUGUCUGGCUCGAGG - 23
• Evidence: experimental ; Illumina [3]

Mature zma-miR166c-3p

• Accession: MIMAT0001383
• Description: Zea mays zma-miR166c-3p mature miRNA
• Sequence: 72 - UCGGACCAGGCUUCAUUCCC - 91
• Evidence: experimental ; Illumina [3]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


3. PubMed ID: 14999285
   microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity
   "Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC"
   "Nature (2004) 428:84-88