Stem-loop zma-MIR171b

Accession

MI0001492

Description

Zea mays zma-MIR171b precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

21 open access papers mention zma-MIR171b
(64 sentences)

Sequence

1672 reads, 5349 reads per million, 113 experiments

cggGAUAUUGGCGCGGUUCAAUCagaaagcuugcgcuccaggcccgaggggcuccacucuuugaUUGAGCCGUGCCAAUAUCACg
((.(((((((((((((((((((((((.((...(.(((((........))))).)..)).))))))))))))))))))))))).))

Structure

  g                       a  cuu c     agg 
cg GAUAUUGGCGCGGUUCAAUCaga ag   g gcucc   c
|| ||||||||||||||||||||||| ||   | |||||    
gC CUAUAACCGUGCCGAGUUaguuu uc   c cgggg   c
  A                       c  -ac u     agc 

Annotation confidence High

Genome context

chr5: 223360741-223360825 [-]

Mature zma-miR171b-5p

• Accession: MIMAT0015155
• Description: Zea mays zma-miR171b-5p mature miRNA
• Sequence: 4 - GAUAUUGGCGCGGUUCAAUC - 23
• Evidence: experimental ; Illumina [2]

Mature zma-miR171b-3p

• Accession: MIMAT0001386
• Description: Zea mays zma-miR171b-3p mature miRNA
• Sequence: 65 - UUGAGCCGUGCCAAUAUCAC - 84
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716