Stem-loop sequence zma-MIR172a

Accession

MI0001493 (change log)

Description

Zea mays miR172a stem-loop

Gene family

MIPF0000035; MIR172

Literature search

38 open access papers mention zma-MIR172a
(222 sentences)

Stem-loop

   gc ug               a  acc   -  a      cc 
5'   g  gcaucaucaagauuc ca   cau ca uccgaa  a
     |  ||||||||||||||| ||   ||| || ||||||  c
3'   c  cguaguaguucuaag gu   gua gu agguuu  u
   ua gu               a  -ay   c  a      ag 

Deep sequencing

2374 reads, 2.08e+03 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr7: 54276707-54276789 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001493

Mature sequence zma-miR172a

• Accession: MIMAT0001387
• Sequence: 63 - agaaucuugaugaugcugca - 82
• Deep sequencing: 2355 reads, 4 experiments
• Evidence: by similarity; MI0000216

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).