Stem-loop zma-MIR172d

Accession

MI0001494

Description

Zea mays zma-MIR172d precursor miRNA

Literature search

36 open access papers mention zma-MIR172d
(207 sentences)

Sequence

2028 reads, 5296 reads per million, 3 experiments

gugCAGCACCAUCAAGAUUCACAuccccagcucgaucugugcaugaugagaugAGAAUCUUGAUGAUGCUGCAu
((((((((.(((((((((((.(((((.((((.(.....).)).))..).)))).))))))))))).))))))))

Structure

        C           A    - -c  -  u g 
gugCAGCA CAUCAAGAUUC CAuc c  ca gc c a
|||||||| ||||||||||| |||| |  || || | u
uACGUCGU GUAGUUCUAAG guag g  gu cg g c
        A           A    a ua  a  u u 

Annotation confidence Not enough data

Genome context

chr6: 172029786-172029859 [+]

Mature zma-miR172d-5p

• Accession: MIMAT0015156
• Description: Zea mays zma-miR172d-5p mature miRNA
• Sequence: 4 - CAGCACCAUCAAGAUUCACA - 23
• Evidence: experimental ; Illumina [2]

Mature zma-miR172d-3p

• Accession: MIMAT0001388
• Description: Zea mays zma-miR172d-3p mature miRNA
• Sequence: 54 - AGAAUCUUGAUGAUGCUGCA - 73
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716