Stem-loop zma-MIR172c

Accession

MI0001496

Description

Zea mays zma-MIR172c precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

37 open access papers mention zma-MIR172c
(224 sentences)

Sequence

2036 reads, 5389 reads per million, 4 experiments

gugCAGCACCACCAAGAUUCACAuccaacucucacgcaucuucagugaugcaugcaugcucugugaugucucgcagcagcuauaugcauaugugaugagaugAGAAUCUUGAUGAUGCUGCAu
((((((((.((.((((((((.((((((....(((((((((......)))))(((((((((((((((....)))))).)))...))))))..)))))).)))).)))))))).)).))))))))

Structure

        C  C        A    -  acuc    gcaucuucagugaugc      ---   -      u 
gugCAGCA CA CAAGAUUC CAuc ca    ucac                augcau   gcu cuguga g
|||||||| || |||||||| |||| ||    ||||                ||||||   ||| ||||||  
uACGUCGU GU GUUCUAAG guag gu    agug                uacgua   cga gacgcu u
        A  A        A    a  ----    --------------ua      uau   c      c 

Annotation confidence High

Genome context

chr4: 174154928-174155050 [+]

Mature zma-miR172c-5p

• Accession: MIMAT0015158
• Description: Zea mays zma-miR172c-5p mature miRNA
• Sequence: 4 - CAGCACCACCAAGAUUCACA - 23
• Evidence: experimental ; Illumina [2]

Mature zma-miR172c-3p

• Accession: MIMAT0001390
• Description: Zea mays zma-miR172c-3p mature miRNA
• Sequence: 103 - AGAAUCUUGAUGAUGCUGCA - 122
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716