Stem-loop sbi-MIR166d

Accession

MI0001497

Description

Sorghum bicolor sbi-MIR166d precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

5 open access papers mention sbi-MIR166d
(11 sentences)

Sequence

ggggaauguugucuggcucgaggugcaggaacaugcagaucucaucggucuagauuguuguugaucUCGGACCAGGCUUCAUUCCCc
((((((((..((((((.(((((((.(((.((((..((((((.....))))).)..)))).)))))))))).))))))..))))))))

Structure

        uu      c       g   g    ug -     u 
ggggaaug  gucugg ucgaggu cag aaca  c agauc c
||||||||  |||||| ||||||| ||| ||||  | ||||| a
cCCCUUAC  CGGACC GGCUcua guu uugu  g ucugg u
        UU      A       -   g    ua a     c 

Annotation confidence Not enough data

Genome context

chr4: 63914216-63914302 [-]

Mature sbi-miR166d

• Accession: MIMAT0001391
• Description: Sorghum bicolor sbi-miR166d mature miRNA
• Sequence: 67 - UCGGACCAGGCUUCAUUCCC - 86
• Evidence: not_experimental

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 15660154
   Sorghum genome sequencing by methylation filtration
   Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
   PLoS Biol (2005) 3:e13