miRBase entry: sbi-MIR156b

Stem-loop sbi-MIR156b


Accession
MI0001506
Description
Sorghum bicolor sbi-MIR156b precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
8 open access papers mention sbi-MIR156b
(28 sentences)

Sequence

UGACAGAAGAGAGUGAGCACacacggugguuucuuagcaugagugccauguugggagcugugcgugcucacucucuaucuguca
((((((((((((((((((((.((((((....((((((((((.....)))))))))))))))).))))))))))))).)))))))

Structure
       -             a      gguu          a 
UGACAGA AGAGAGUGAGCAC cacggu    ucuuagcaug g
||||||| ||||||||||||| ||||||    |||||||||| u
acugucu ucucucacucgug gugucg    aggguuguac g
       a             c      ----          c 


Annotation confidence Not enough data
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Genome context
chr3: 3415906-3415989 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sbi-MIR156b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR156b

Accession MIMAT0001400
Description Sorghum bicolor sbi-miR156b mature miRNA
Sequence 1 - UGACAGAAGAGAGUGAGCAC - 20
Evidence not_experimental

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 15660154
    Sorghum genome sequencing by methylation filtration
    Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
    PLoS Biol (2005) 3:e13