miRBase entry: sbi-MIR160b

Stem-loop sbi-MIR160b


Accession
MI0001510
Description
Sorghum bicolor sbi-MIR160b precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
3 open access papers mention sbi-MIR160b
(12 sentences)

Sequence

UGCCUGGCUCCCUGUAUGCCAcacauguagcccaacccguggcgugauuggaugcuguggguggcgugcaaggagccaagca
(((.(((((((.((((((((((.((((((..((((.(((...)).).)))).))).))).)))))))))).))))))).)))

Structure
   C       C          a   -   gc    c -  u 
UGC UGGCUCC UGUAUGCCAc cau gua  ccaa c cg  
||| ||||||| |||||||||| ||| |||  |||| | || g
acg accgagg acgugcggug gug cgu  gguu g gc  
   a       a          g   u   -a    a u  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr10: 57093822-57093903 [+]

Database links

Mature sbi-miR160b

Accession MIMAT0001404
Description Sorghum bicolor sbi-miR160b mature miRNA
Sequence 1 - UGCCUGGCUCCCUGUAUGCCA - 21
Evidence not_experimental

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 15660154
    Sorghum genome sequencing by methylation filtration
    Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
    PLoS Biol (2005) 3:e13