miRBase entry: sbi-MIR169b

Stem-loop sbi-MIR169b


Accession
MI0001515
Description
Sorghum bicolor sbi-MIR169b precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
4 open access papers mention sbi-MIR169b
(25 sentences)

Sequence

CAGCCAAGGAUGACUUGCCGGauaugugcaugcauauguuacaaggcagcauaugcacccuguuacaagccugccuguucuccggcaaguuguccuuggcua
.(((((((((((((((((((((.(((.(((.((...(((.(((.((..((....))..))))).))).)).))).)))..))))))))))))))))))))).

Structure
C                     -u   u   u  aua   u   a  ca  a 
 AGCCAAGGAUGACUUGCCGGa  aug gca gc   ugu aca gg  gc u
 |||||||||||||||||||||  ||| ||| ||   ||| ||| ||  ||  
 ucgguuccuguugaacggccu  ugu cgu cg   aca ugu cc  cg a
a                     cu   c   c  --a   u   -  ca  u 


Annotation confidence Not enough data
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Genome context
chr10: 56120427-56120528 [-]

Database links

Mature sbi-miR169b

Accession MIMAT0001409
Description Sorghum bicolor sbi-miR169b mature miRNA
Sequence 1 - CAGCCAAGGAUGACUUGCCGG - 21
Evidence not_experimental

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 15660154
    Sorghum genome sequencing by methylation filtration
    Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA
    PLoS Biol (2005) 3:e13