Stem-loop sequence oar-mir-431

Accession

MI0001520 (change log)

Description

Ovis aries miR-431 stem-loop

Gene family

MIPF0000142; mir-431

Literature search

5 open access papers mention oar-mir-431
(15 sentences)

Stem-loop

   -----------------c          gu u     aggccgucaugcaggc 
5'                   guccugcgag  g cuugc                c
                     ||||||||||  | |||||                 
3'                   cgggacguuc  c ggacg                a
   acacagcagaacgcucug          ug u     uugcaaaggcagucac 

Deep sequencing

97 reads, 0 reads per million, 12 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Oar_v4.0; GCA_000298735.2): chr18: 64383338-64383428 [+]
• Overlapping transcripts:

  antisense

  ENSOART00000015109 ; oar-mir-136-201; exon 1

Clustered miRNAs

< 10kb from oar-mir-431

• oar-mir-665: chr18: 64379046-64379140 [+]
• oar-mir-431: chr18: 64383338-64383428 [+]
• oar-mir-433: chr18: 64384195-64384308 [+]
• oar-mir-127: chr18: 64385295-64385408 [+]
• oar-mir-432: chr18: 64386792-64386881 [+]
• oar-mir-136: chr18: 64386976-64387067 [+]

Database links

• miRBase Tracker:MI0001520

Mature sequence oar-miR-431

• Accession: MIMAT0001414
• Sequence: 13 - ugucuugcaggccgucaugcagg - 35
• Deep sequencing: 87 reads, 12 experiments
• Evidence: experimental; PCR [1]

References

1. PMID:15854907 "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11 locus" Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N, Georges M, Charlier C Curr Biol. 15:743-749(2005).