Stem-loop sequence oar-mir-136

Accession

MI0001523 (change log)

Description

Ovis aries miR-136 stem-loop

Gene family

MIPF0000099; mir-136

Literature search

6 open access papers mention oar-mir-136
(9 sentences)

Stem-loop

   ucg   -        g        c     uuu          uuc 
5'    gau gagcccuc gaggacuc auuug   ugaugaugga   u
      ||| |||||||| |||||||| |||||   ||||||||||   u
3'    cua cuugggag cuucugag uaaac   gcuacuaccu   a
   -ua   u        a        -     ucu          cgc 

Deep sequencing

15757 reads, 1.23e+04 reads per million, 14 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Oar_v4.0; GCA_000298735.2): chr18: 64386976-64387067 [+]
• Overlapping transcripts:

  antisense

  ENSOART00000015109 ; oar-mir-136-201; exon 1

Clustered miRNAs

< 10kb from oar-mir-136

• oar-mir-665: chr18: 64379046-64379140 [+]
• oar-mir-431: chr18: 64383338-64383428 [+]
• oar-mir-433: chr18: 64384195-64384308 [+]
• oar-mir-127: chr18: 64385295-64385408 [+]
• oar-mir-432: chr18: 64386792-64386881 [+]
• oar-mir-136: chr18: 64386976-64387067 [+]

Database links

• miRBase Tracker:MI0001523

Mature sequence oar-miR-136

• Accession: MIMAT0001417
• Sequence: 20 - acuccauuuguuuugaugaugga - 42
• Deep sequencing: 14733 reads, 14 experiments
• Evidence: experimental; PCR [1]

References

1. PMID:15854907 "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11 locus" Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N, Georges M, Charlier C Curr Biol. 15:743-749(2005).