Stem-loop sequence mmu-mir-433

Accession

MI0001525 (change log)

Symbol

MGI:Mir433

Description

Mus musculus miR-433 stem-loop

Gene family

MIPF0000177; mir-433

Literature search

38 open access papers mention mmu-mir-433
(350 sentences)

Stem-loop

   ------------------------ugcccgg      gua   u           u   --------  g     cu 
5'                                ggagaa   cgg gagccugucau auu        ca agagg  a
                                  ||||||   ||| ||||||||||| |||        || |||||   
3'                                ccucuu   gcu cucggguagua uag        gu ucucc  g
   cccgacggaaguaccacaccacggcgaugga      gug   c           c   gaagaguu  g     ua 

Deep sequencing

111066 reads, 354 reads per million, 94 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr12: 109591715-109591838 [+]
• Overlapping transcripts:

  antisense

  ENSMUST00000149046 ; Rtl1-201; exon 2

Clustered miRNAs

< 10kb from mmu-mir-433

• mmu-mir-337: chr12: 109585789-109585885 [+]
• mmu-mir-3544: chr12: 109585813-109585873 [-]
• mmu-mir-540: chr12: 109586080-109586146 [+]
• mmu-mir-665: chr12: 109586314-109586407 [+]
• mmu-mir-3070-1: chr12: 109587943-109588031 [+]
• mmu-mir-3070-2: chr12: 109588592-109588680 [+]
• mmu-mir-431: chr12: 109590447-109590537 [+]
• mmu-mir-433: chr12: 109591715-109591838 [+]
• mmu-mir-127: chr12: 109592846-109592915 [+]
• mmu-mir-434: chr12: 109594506-109594599 [+]
• mmu-mir-432: chr12: 109594956-109595030 [+]
• mmu-mir-3071: chr12: 109595318-109595397 [-]
• mmu-mir-136: chr12: 109595327-109595388 [+]

Database links

• EntrezGene:Mir433
• MGI:Mir433
• RNAcentral:URS000021534B_10090
• miRBase Tracker:MI0001525

Mature sequence mmu-miR-433-5p

• Accession: MIMAT0001419
• Previous IDs: mmu-miR-433-5p;mmu-miR-433*
• Sequence: 15 - uacggugagccugucauuauuc - 36
• Deep sequencing: 2662 reads, 49 experiments
• Evidence: experimental; PCR [1], Illumina [3-4]
• Database links:
  • RNAcentral:URS000025F226_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-433-5p
  • miRDB:mmu-miR-433-5p
  • microrna.org:mmu-miR-433-5p

Mature sequence mmu-miR-433-3p

• Accession: MIMAT0001420
• Previous IDs: mmu-miR-433-3p;mmu-miR-433
• Sequence: 67 - aucaugaugggcuccucggugu - 88
• Deep sequencing: 108391 reads, 94 experiments
• Evidence: experimental; PCR [1], cloned [2], Illumina [3-4]
• Database links:
  • RNAcentral:URS000024DFCE_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-433-3p
  • miRDB:mmu-miR-433-3p
  • microrna.org:mmu-miR-433-3p

References

1. PMID:15854907 "RNAi-mediated allelic trans-interaction at the imprinted Rtl1/Peg11 locus" Davis E, Caiment F, Tordoir X, Cavaille J, Ferguson-Smith A, Cockett N, Georges M, Charlier C Curr Biol. 15:743-749(2005).
2. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
3. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
4. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).