miRBase entry: sbi-MIR399g

Stem-loop sbi-MIR399g


Accession
MI0001547
Description
Sorghum bicolor sbi-MIR399g precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
3 open access papers mention sbi-MIR399g
(5 sentences)

Sequence

ccagaugugcacuugcauugcugggcaacuucuccuuuggcagaugcgcaaugugcuccgacccuggggcuucuuccgcgccuacUGCCAAAGGAAAUUUGCCCCGgaauucaccugcacagcca
.....((((((..((.(((.(.((((((.((.((((((((((((.((((.....((((((....)))))).......)))).).))))))))))))).)))))).).))).))..))))))....

Structure
ccaga      cu  c   g u      c  c           - u    --aaugu      a 
     ugugca  ug auu c gggcaa uu uccuuuggcag a gcgc       gcuccg c
     ||||||  || ||| | |||||| || ||||||||||| | ||||       ||||||  
     acacgu  ac uaa G CCCGUU AA AGGAAACCGUc u cgcg       cggggu c
-accg      cc  u   g C      U  -           a c    ccuucuu      c 


Annotation confidence Not enough data
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Genome context
chr9: 55511807-55511931 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from sbi-MIR399g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR399g

Accession MIMAT0001443
Description Sorghum bicolor sbi-miR399g mature miRNA
Sequence 86 - UGCCAAAGGAAAUUUGCCCCG - 106
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13