miRBase entry: sbi-MIR168

Stem-loop sbi-MIR168


Accession
MI0001556
Description
Sorghum bicolor sbi-MIR168 precursor miRNA
Gene family
MIPF0000081; MIR168

Literature search
1 open access papers mention sbi-MIR168
(1 sentences)

Sequence

gccgccgcgccgccucgggcUCGCUUGGUGCAGAUCGGGACcugccgccgugcucggacgggacagaucccgccuugcaccaagugaauccgagccggagcagccg
...((.((.(((.((((((.(((((((((((((..(((((.(((((((((....))).)))..))).)))))..))))))))))))).)))))).))).)).))..

Structure
gcc  c  g   c      c             AU     C   --   -   u 
   gc gc ccg cucggg UCGCUUGGUGCAG  CGGGA cug  ccg ccg g
   || || ||| |||||| |||||||||||||  ||||| |||  ||| |||  
   cg cg ggc gagccu agugaaccacguu  gcccu gac  ggc ggc c
-gc  a  a   c      a             cc     a   ag   a   u 


Annotation confidence Not enough data
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Genome context
chr4: 2247075-2247180 [-]

Database links

Mature sbi-miR168

Accession MIMAT0001452
Description Sorghum bicolor sbi-miR168 mature miRNA
Sequence 21 - UCGCUUGGUGCAGAUCGGGAC - 41
Evidence not_experimental

References

  1. PubMed ID: 15916721
    Identification and characterization of new plant microRNAs using EST analysis
    "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
    "Cell Res (2005) 15:336-360

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13