miRBase entry: sbi-MIR171d

Stem-loop sbi-MIR171d


Accession
MI0001565
Description
Sorghum bicolor sbi-MIR171d precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
2 open access papers mention sbi-MIR171d
(2 sentences)

Sequence

auaauggaauaguagcuaugauguuggcucggcucacucagaccaccucuccgauccucagcucguguccauugcgacaucgaucauguauauaugucgcuggucgugguuucUGAUUGAGCCGUGCCAAUAUCucaguacucuuccauauau
...((((((.((((.((..(((((((((.(((((((.(((((((((.....(((........))).(.(((..(((((((..((.....))..)))))))))).)))))..))))).))))))).)))))))))..)))))).))))))....

Structure
-aua      u    g  au         u       c     --    cucuccgauccucagcucgu u   uu       cg  c 
    auggaa agua cu  gauguuggc cggcuca ucaga  ccac                    g cca  gcgacau  au a
    |||||| |||| ||  ||||||||| ||||||| |||||  ||||                    | |||  |||||||  || u
    uaccuu ucau ga  CUAUAACCG GCCGAGU AGUcu  ggug                    c ggu  cgcugua  ua g
uaua      c    -  cu         U       U     uu    -------------------- u   --       ua  u 


Annotation confidence Not enough data
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Genome context
chr1: 78121346-78121498 [-]

Database links

Mature sbi-miR171d

Accession MIMAT0001461
Description Sorghum bicolor sbi-miR171d mature miRNA
Sequence 114 - UGAUUGAGCCGUGCCAAUAUC - 134
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13