Stem-loop sbi-MIR319a

Accession

MI0001573

Description

Sorghum bicolor sbi-MIR319a precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

6 open access papers mention sbi-MIR319a
(19 sentences)

Sequence

cugccgccaugguugugauauggccggauggaagagagcguccuucaguccacucaggggcggugcuagggucgaauuagcugccgacucauucacccacaugccaagcaaacggccauggaaacgagcuagcuuugcagaugagugaaugaagcgggagguaaaagcuucgaucucgcaccaucuuugcUUGGACUGAAGGGUGCUCCCuccuccccuccuuaauuguuuacuuuacccauggcgcag
((((.(((((((..((((((.((..((..(((.(.(((((((((((((((((..((((((.(((((..(((((((((((.((.(((..((((((((.((..(((.((((....((((........).))).)))).)))..)).))))))))..))).)).)))....)))))))).))))).))))))..)))))))))))))))))).)))..))..)).)).....)))).....)))))))))))

Structure

    c       ---uu    -----  u  cc  au   a a                 cu      c     ua        ----   g  g   ac        c  ca   c    aaac   - aug 
cugc gccaugg     guga     ua gg  gg  gga g gagcguccuucagucca  cagggg ggugc  gggucgaa    uua cu ccg  ucauucac ca  ugc aagc    ggc c   g
|||| |||||||     ||||     || ||  ||  ||| | |||||||||||||||||  |||||| |||||  ||||||||    ||| || |||  |||||||| ||  ||| ||||    ||| |    
gacg cgguacc     cauu     au cc  cc  ccu C CUCGUGGGAAGUCAGGU  guuucu ccacg  ucuagcuu    aau ga ggc  aguaagug gu  acg uucg    ucg g   a
    -       cauuu    uguua  u  uc  cu   C -                 Uc      a     -c        cgaa   g  g   ga        a  ag   u    ---a   a caa 

Annotation confidence Not enough data

Genome context

chr3: 1244769-1245017 [+]

Mature sbi-miR319a

• Accession: MIMAT0001469
• Description: Sorghum bicolor sbi-miR319a mature miRNA
• Sequence: 191 - UUGGACUGAAGGGUGCUCCC - 210
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13