Stem-loop ame-mir-1-1

Accession

MI0001575

Description

Apis mellifera ame-mir-1-1 precursor miRNA

Literature search

5 open access papers mention ame-mir-1-1
(15 sentences)

Sequence

5656315 reads, 93390.0 reads per million, 24 experiments

ccgggcgaugcuguuCCGUGCUUCCUUACUUCCCAUaguggaugcgacguaUGGAAUGUAAAGAAGUAUGGAGcugcgcccgg
(((((((.....((((((((((((.((((...(((((((.(...).)).)))))...)))).))))))))))))..)))))))

Structure

       augcu            C    UUC     -  g a 
ccgggcg     guuCCGUGCUUC UUAC   CCAUa gu g  
|||||||     |||||||||||| ||||   ||||| || | u
ggcccgc     cGAGGUAUGAAG AAUG   GGUau ca c  
       ---gu            A    UAA     g  g g 

Annotation confidence High

Genome context

CM000069.5: 4198820-4198902 [-]

Mature ame-miR-1-5p

• Accession: MIMAT0053038
• Description: Apis mellifera ame-miR-1-5p mature miRNA
• Sequence: 16 - CCGUGCUUCCUUACUUCCCAU - 36
• Evidence: experimental ; array [1], RTPCR [1], Illumina [2]

Mature ame-miR-1-3p

• Accession: MIMAT0001471
• Description: Apis mellifera ame-miR-1-3p mature miRNA
• Sequence: 52 - UGGAAUGUAAAGAAGUAUGGAG - 73
• Evidence: experimental ; array [1], RTPCR [1], Illumina [2]

References

1. PubMed ID: 17543122
   Computational and transcriptional evidence for microRNAs in the honey bee genome
   Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
   Genome Biol (2007) 8:R97


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670