Stem-loop sequence aga-mir-9c

Accession

MI0001635 (change log)

Description

Anopheles gambiae miR-9c stem-loop

Gene family

MIPF0000014; mir-9

Literature search

3 open access papers mention aga-mir-9c
(4 sentences)

Stem-loop

   u      c  u            cu    g    -      uuu 
5'  uuccgg ug aucuuugguauu  agcu uaga auguug   u
    |||||| || ||||||||||||  |||| |||| ||||||   c
3'  aggguc ac uggagaccauga  ucga aucu uauaau   a
   a      a  c            uu    a    c      guu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AgamP3; GCA_000005575.1): chr3R: 5891167-5891256 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aga-mir-9c

• aga-mir-9c: chr3R: 5891167-5891256 [-]
• aga-mir-306: chr3R: 5888600-5888675 [-]
• aga-mir-79: chr3R: 5888298-5888391 [-]
• aga-mir-9b: chr3R: 5887786-5887878 [-]

Database links

• miRBase Tracker:MI0001635

Mature sequence aga-miR-9c

• Accession: MIMAT0001530
• Sequence: 13 - ucuuugguauucuagcuguaga - 34
• Evidence: by similarity; MI0000413