miRBase entry: osa-MIR435

Stem-loop osa-MIR435


Accession
MI0001687
Description
Oryza sativa osa-MIR435 precursor miRNA

Literature search
4 open access papers mention osa-MIR435
(6 sentences)

Sequence

129 reads, 99 reads per million, 2 experiments
uuccaccuucccaaaaacuccccagcagaccuggagcgaaaauugccuugaauuagcuucagaccuauagugucguugauaguuuagggacauguuUUAUCCGGUAUUGGAGUUGAgggaugaaaauuggac
.((((...((((...((((((.......(((.(((..((((..((((((((((((......((((....).))).....)))))))))).))..)))).))))))...))))))..)))).......)))).

Structure
u    ----ccu    aaa      ccagcag   u   gc    au  -          gcuuca   - u 
 ucca       uccc   aacucc       acc gga  gaaa  ug ccuugaauua      gac c a
 ||||       ||||   ||||||       ||| |||  ||||  || ||||||||||      ||| |  
 aggu       aggg   UUGAGG       UGG CCU  UUuu  ac gggauuugau      cug g u
c    uaaaagu    -AG      ----UUA   -   -A    gu  a          -aguug   u a 


Annotation confidence Not enough data
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Genome context
Chr3: 18209450-18209581 [+]

Database links

Mature osa-miR435

Accession MIMAT0001585
Description Oryza sativa osa-miR435 mature miRNA
Sequence 97 - UUAUCCGGUAUUGGAGUUGA - 116
Evidence experimental
cloned [1]
Database links

References

  1. PubMed ID: 15805478
    Cloning and characterization of microRNAs from rice
    "Sunkar R, Girke T, Jain PK, Zhu JK"
    "Plant Cell (2005) 17:1397-1411