Stem-loop osa-MIR435

Accession

MI0001687

Description

Oryza sativa osa-MIR435 precursor miRNA

Literature search

4 open access papers mention osa-MIR435
(6 sentences)

Sequence

129 reads, 89 reads per million, 2 experiments

uuccaccuucccaaaaacuccccagcagaccuggagcgaaaauugccuugaauuagcuucagaccuauagugucguugauaguuuagggacauguuUUAUCCGGUAUUGGAGUUGAgggaugaaaauuggac
.((((...((((...((((((.......(((.(((..((((..((((((((((((......((((....).))).....)))))))))).))..)))).))))))...))))))..)))).......)))).

Structure

u    ----ccu    aaa      ccagcag   u   gc    au  -          gcuuca   - u 
 ucca       uccc   aacucc       acc gga  gaaa  ug ccuugaauua      gac c a
 ||||       ||||   ||||||       ||| |||  ||||  || ||||||||||      ||| |  
 aggu       aggg   UUGAGG       UGG CCU  UUuu  ac gggauuugau      cug g u
c    uaaaagu    -AG      ----UUA   -   -A    gu  a          -aguug   u a 

Annotation confidence Low

Genome context

Chr3: 18209450-18209581 [+]

Mature osa-miR435

• Accession: MIMAT0001585
• Description: Oryza sativa osa-miR435 mature miRNA
• Sequence: 97 - UUAUCCGGUAUUGGAGUUGA - 116
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15805478
   Cloning and characterization of microRNAs from rice
   "Sunkar R, Girke T, Jain PK, Zhu JK"
   "Plant Cell (2005) 17:1397-1411