Stem-loop osa-MIR439a

Accession

MI0001691

Description

Oryza sativa osa-MIR439a precursor miRNA

Gene family

MIPF0000092; MIR439

Literature search

2 open access papers mention osa-MIR439a
(2 sentences)

Sequence

93 reads, 64 reads per million, 2 experiments

uacccugucgaacugacgcaguucgacauguaccugucgaacugugguuguucgauagguaucccUGUCGAACCGCGGUUGUUCGAcagggug
(((((((((((((...(((.((((((((.(((((((((((((.......)))))))))))))...)))))))).)))...)))))))))))))

Structure

             uga   a        --u             ug 
uacccugucgaac   cgc guucgaca   guaccugucgaac  u
|||||||||||||   ||| ||||||||   |||||||||||||  g
gugggacAGCUUG   GCG CAAGCUGU   uauggauagcuug  g
             UUG   C        ccc             uu 

Annotation confidence Not enough data

Genome context

Chr1: 19880143-19880235 [+]

Mature osa-miR439a

• Accession: MIMAT0001589
• Description: Oryza sativa osa-miR439a mature miRNA
• Sequence: 66 - UGUCGAACCGCGGUUGUUCGA - 86
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15805478
   Cloning and characterization of microRNAs from rice
   "Sunkar R, Girke T, Jain PK, Zhu JK"
   "Plant Cell (2005) 17:1397-1411