miRBase entry: osa-MIR439e

Stem-loop osa-MIR439e


Accession
MI0001695
Description
Oryza sativa osa-MIR439e precursor miRNA
Gene family
MIPF0000092; MIR439

Literature search
2 open access papers mention osa-MIR439e
(2 sentences)

Sequence

99 reads, 71 reads per million, 2 experiments
ccaccuacccugucgaacugacgcaguucgacauguaccugucgaacugugguuguucgauagguaucccUGUCGAACCGCGGUUGUUCGAcagggug
.....(((((((((((((...(((.((((((((.(((((((((((((.......)))))))))))))...)))))))).)))...)))))))))))))

Structure
ccacc             uga   a        --u             ug 
     uacccugucgaac   cgc guucgaca   guaccugucgaac  u
     |||||||||||||   ||| ||||||||   |||||||||||||  g
     gugggacAGCUUG   GCG CAAGCUGU   uauggauagcuug  g
-----             UUG   C        ccc             uu 


Annotation confidence Not enough data
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Genome context
Chr8: 15057569-15057666 [-]

Database links

Mature osa-miR439e

Accession MIMAT0001593
Description Oryza sativa osa-miR439e mature miRNA
Sequence 71 - UGUCGAACCGCGGUUGUUCGA - 91
Evidence experimental
cloned [1]
Database links

References

  1. PubMed ID: 15805478
    Cloning and characterization of microRNAs from rice
    "Sunkar R, Girke T, Jain PK, Zhu JK"
    "Plant Cell (2005) 17:1397-1411