miRBase entry: osa-MIR440

Stem-loop osa-MIR440


Accession
MI0001701
Description
Oryza sativa osa-MIR440 precursor miRNA

Literature search
2 open access papers mention osa-MIR440
(2 sentences)

Sequence

97 reads, 76 reads per million, 2 experiments
auugcuauuguuggugcugggcucguccugaucacuaggagacucugaucaagcuaggccuaaacuuauguauuAGUGUCUCCUGAUGAUCGGGACAAggcuaacaccgaugagagcgau
((((((.(((((((((.(((.((.((((((((((.((((((((.(((((...((((((......)))).))))))).)))))))).)))))))))).)).))).))))))))).))))))

Structure
      a         c   g  c          c        u     caa  -    cc 
auugcu uuguuggug ugg cu guccugauca uaggagac cugau   gc uagg  u
|||||| ||||||||| ||| || |||||||||| |||||||| |||||   || ||||   
uagcga aguagccac auc gA CAGGGCUAGU GUCCUCUG GAuua   ug auuc  a
      g         a   g  A          A        U     ---  u    aa 


Annotation confidence Not enough data
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Genome context
Chr11: 9164805-9164924 [-]

Database links

Mature osa-miR440

Accession MIMAT0001599
Description Oryza sativa osa-miR440 mature miRNA
Sequence 75 - AGUGUCUCCUGAUGAUCGGGACAA - 98
Evidence experimental
cloned [1]
Database links

References

  1. PubMed ID: 15805478
    Cloning and characterization of microRNAs from rice
    "Sunkar R, Girke T, Jain PK, Zhu JK"
    "Plant Cell (2005) 17:1397-1411