Stem-loop osa-MIR440

Accession

MI0001701

Description

Oryza sativa osa-MIR440 precursor miRNA

Literature search

2 open access papers mention osa-MIR440
(2 sentences)

Sequence

97 reads, 68 reads per million, 2 experiments

auugcuauuguuggugcugggcucguccugaucacuaggagacucugaucaagcuaggccuaaacuuauguauuAGUGUCUCCUGAUGAUCGGGACAAggcuaacaccgaugagagcgau
((((((.(((((((((.(((.((.((((((((((.((((((((.(((((...((((((......)))).))))))).)))))))).)))))))))).)).))).))))))))).))))))

Structure

      a         c   g  c          c        u     caa  -    cc 
auugcu uuguuggug ugg cu guccugauca uaggagac cugau   gc uagg  u
|||||| ||||||||| ||| || |||||||||| |||||||| |||||   || ||||   
uagcga aguagccac auc gA CAGGGCUAGU GUCCUCUG GAuua   ug auuc  a
      g         a   g  A          A        U     ---  u    aa 

Annotation confidence Low

Genome context

Chr11: 9164805-9164924 [-]

Mature osa-miR440

• Accession: MIMAT0001599
• Description: Oryza sativa osa-miR440 mature miRNA
• Sequence: 75 - AGUGUCUCCUGAUGAUCGGGACAA - 98
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 15805478
   Cloning and characterization of microRNAs from rice
   "Sunkar R, Girke T, Jain PK, Zhu JK"
   "Plant Cell (2005) 17:1397-1411