Stem-loop osa-MIR444a

Accession

MI0001719

Description

Oryza sativa osa-MIR444a precursor miRNA

Gene family

MIPF0000402; MIR444

Literature search

27 open access papers mention osa-MIR444a
(74 sentences)

Sequence

2700 reads, 1059 reads per million, 2 experiments

augcaauugggggcagcaaGCUAGAGGUGGCAACUGCAUAauuugcaagaaauuguuggcugaagaucauaccgaugauauucuugcaaguuaUGCAGUUGCUGCCUCAAGCUUGCUGCcuccuguugcca
..(((((.((((((((((((((.((((((((((((((((((((((((((((((((((((.(((...)))..)))))))).)))))))))))))))))))))))))))).)))))))))))))).)))))..

Structure

au     u              A                            -        -c   a 
  gcaau gggggcagcaaGCU GAGGUGGCAACUGCAUAauuugcaagaa auuguugg  uga  
  ||||| |||||||||||||| |||||||||||||||||||||||||||| ||||||||  ||| g
  cguug ccucCGUCGUUCGA CUCCGUCGUUGACGUauugaacguucuu uaguagcc  acu  
ac     u              A                            a        au   a 

Annotation confidence High

Genome context

Unknown

Mature osa-miR444a-3p.2

• Accession: MIMAT0005790
• Description: Oryza sativa osa-miR444a-3p.2 mature miRNA
• Sequence: 94 - UGCAGUUGCUGCCUCAAGCUU - 114
• Evidence: experimental ; MPSS [2], Northern [2]

Mature osa-miR444a-3p.1

• Accession: MIMAT0001617
• Description: Oryza sativa osa-miR444a-3p.1 mature miRNA
• Sequence: 99 - UUGCUGCCUCAAGCUUGCUGC - 119
• Evidence: experimental ; cloned [1], MPSS [2], Northern [2]

Mature osa-miR444a-5p

• Accession: MIMAT0020918
• Description: Oryza sativa osa-miR444a-5p mature miRNA
• Sequence: 20 - GCUAGAGGUGGCAACUGCAUA - 40
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 15805478
   Cloning and characterization of microRNAs from rice
   "Sunkar R, Girke T, Jain PK, Zhu JK"
   "Plant Cell (2005) 17:1397-1411


2. PubMed ID: 18353984
   Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
   "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
   "Proc Natl Acad Sci U S A (2008) 105:4951-4956


3. PubMed ID: 21791435
   Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)
   "Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q"
   "J Exp Bot (2011) 62:4943-4954