Stem-loop hsa-mir-329-1

Accession

MI0001725

Symbol

HGNC: MIR329-1

Description

Homo sapiens hsa-mir-329-1 precursor miRNA mir-329

Gene
family

RF04295; mir-329

Literature search

28 open access papers mention hsa-mir-329-1
(177 sentences)

Sequence

2391 reads, 54 reads per million, 85 experiments

gguaccugaagaGAGGUUUUCUGGGUUUCUGUUUCuuuaaugaggacgaAACACACCUGGUUAACCUCUUUuccaguauc
(((((..(((((((((((..((((((...((((((.((......)).)))))).))))))..)))))))))))..)))))

Structure

     cu           UU      UUC      u  aa 
gguac  gaagaGAGGUU  CUGGGU   UGUUUC uu  u
|||||  |||||||||||  ||||||   |||||| ||   
cuaug  cuUUUCUCCAA  GGUCCA   ACAAag ag  g
     ac           UU      --C      c  ga 

Annotation confidence High

Genome context

chr14: 101026785-101026864 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from hsa-mir-329-1

Mature hsa-miR-329-3p

• Accession: MIMAT0001629
• Description: Homo sapiens hsa-miR-329-3p mature miRNA
• Sequence: 50 - AACACACCUGGUUAACCUCUUU - 71
• Evidence: experimental ; cloned [1,3-4], array-cloned [2], Illumina [5]

Mature hsa-miR-329-5p

• Accession: MIMAT0026555
• Description: Homo sapiens hsa-miR-329-5p mature miRNA
• Sequence: 13 - GAGGUUUUCUGGGUUUCUGUUUC - 35
• Evidence: experimental ; Illumina [5]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 15891114
   Clustering and conservation patterns of human microRNAs
   "Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H"
   "Nucleic Acids Res (2005) 33:2697-2706


3. PubMed ID: 15965474
   Identification of hundreds of conserved and nonconserved human microRNAs
   "Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z"
   "Nat Genet (2005) 37:766-770


4. PubMed ID: 16274478
   Identification of clustered microRNAs using an ab initio prediction method
   Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M
   BMC Bioinformatics (2005) 6:267


5. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45