Stem-loop sequence hsa-mir-329-1

Accession

MI0001725 (change log)

Symbol

HGNC:MIR329-1

Description

Homo sapiens miR-329-1 stem-loop

Gene family

MIPF0000110; mir-329

Literature search

28 open access papers mention hsa-mir-329-1
(176 sentences)

Stem-loop

        cu           uu ug   uuc      u  aa 
5' gguac  gaagagagguu  c  ggu   uguuuc uu  u
   |||||  |||||||||||  |  |||   |||||| ||   
3' cuaug  cuuuucuccaa  g  cca   acaaag ag  g
        ac           uu gu   --c      c  ga 

Deep sequencing

5114 reads, 0.877 reads per million, 114 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr14: 101026785-101026864 [+]
• Overlapping transcripts:

  antisense

  OTTHUMT00000414334 ; BEGAIN-007; intron 1

  OTTHUMT00000414329 ; BEGAIN-001; intron 2

  OTTHUMT00000414331 ; BEGAIN-005; intron 2

  OTTHUMT00000414332 ; BEGAIN-003; intron 2

  OTTHUMT00000414335 ; BEGAIN-006; intron 2

  OTTHUMT00000414337 ; BEGAIN-004; intron 2

  ENST00000557378 ; BEGAIN-007; intron 1

  ENST00000443071 ; BEGAIN-201; intron 1

  ENST00000355173 ; BEGAIN-001; intron 2

  ENST00000553553 ; BEGAIN-005; intron 2

  ENST00000556188 ; BEGAIN-003; intron 2

  ENST00000554140 ; BEGAIN-006; intron 2

  ENST00000554747 ; BEGAIN-004; intron 2

Clustered miRNAs

< 10kb from hsa-mir-329-1

• hsa-mir-379: chr14: 101022066-101022132 [+]
• hsa-mir-411: chr14: 101023325-101023420 [+]
• hsa-mir-299: chr14: 101023794-101023856 [+]
• hsa-mir-380: chr14: 101025017-101025077 [+]
• hsa-mir-1197: chr14: 101025564-101025651 [+]
• hsa-mir-323a: chr14: 101025732-101025817 [+]
• hsa-mir-758: chr14: 101026020-101026107 [+]
• hsa-mir-329-1: chr14: 101026785-101026864 [+]
• hsa-mir-329-2: chr14: 101027100-101027183 [+]
• hsa-mir-494: chr14: 101029634-101029714 [+]
• hsa-mir-1193: chr14: 101030052-101030129 [+]
• hsa-mir-543: chr14: 101031987-101032064 [+]
• hsa-mir-495: chr14: 101033755-101033836 [+]

Database links

• EntrezGene:MIR329-1
• HGNC:MIR329-1
• RNAcentral:URS0000668584_9606
• miRBase Tracker:MI0001725

Mature sequence hsa-miR-329-5p

• Accession: MIMAT0026555
• Sequence: 13 - gagguuuucuggguuucuguuuc - 35
• Deep sequencing: 1096 reads, 36 experiments
• Evidence: experimental; Illumina [5]
• Database links:
  • RNAcentral:URS000075BD0A_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-329-5p
  • miRDB:hsa-miR-329-5p

Mature sequence hsa-miR-329-3p

• Accession: MIMAT0001629
• Sequence: 50 - aacacaccugguuaaccucuuu - 71
• Deep sequencing: 9112 reads, 112 experiments
• Evidence: experimental; cloned [1,3-4], array-cloned [2], Illumina [5]
• Database links:
  • RNAcentral:URS00004C46CF_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-329-3p
  • miRDB:hsa-miR-329-3p
  • microrna.org:hsa-miR-329-3p

References

1. PMID:15891114 "Clustering and conservation patterns of human microRNAs" Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H Nucleic Acids Res. 33:2697-2706(2005).
2. PMID:15965474 "Identification of hundreds of conserved and nonconserved human microRNAs" Bentwich I, Avniel A, Karov Y, Aharonov R, Gilad S, Barad O, Barzilai A, Einat P, Einav U, Meiri E, Sharon E, Spector Y, Bentwich Z Nat Genet. 37:766-770(2005).
3. PMID:16274478 "Identification of clustered microRNAs using an ab initio prediction method" Sewer A, Paul N, Landgraf P, Aravin A, Pfeffer S, Brownstein MJ, Tuschl T, van Nimwegen E, Zavolan M BMC Bioinformatics. 6:267(2005).
4. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
5. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).