miRBase entry: rno-mir-451

Stem-loop rno-mir-451


Accession
MI0001731
Description
Rattus norvegicus rno-mir-451 precursor miRNA
Gene family
MIPF0000148; mir-451

Literature search
51 open access papers mention rno-mir-451
(225 sentences)

Sequence

510615 reads, 441 reads per million, 495 experiments
uuugggaauggcgaggAAACCGUUACCAUUACUGAGUUuaguaAUGGUAAUGGUUCUCUUGCUGCUcccaca
..(((((.((((((((.(((((((((((((((((....))))))))))))))))).)))))))).)))))..

Structure
uu     a        A                 A 
  uggga uggcgagg AACCGUUACCAUUACUG G
  ||||| |||||||| |||||||||||||||||  
  acccU GUCGUUCU UUGGUAAUGGUAaugau U
ac     C        C                 U 


Annotation confidence High
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Genome context
chr10: 65291204-65291275 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-451
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-451-5p

Accession MIMAT0001633
Description Rattus norvegicus rno-miR-451-5p mature miRNA
Sequence 17 - AAACCGUUACCAUUACUGAGUU - 38
Evidence experimental
cloned [2], Northern [2], SOLiD [3]

Mature rno-miR-451-3p

Accession MIMAT0017193
Description Rattus norvegicus rno-miR-451-3p mature miRNA
Sequence 44 - AUGGUAAUGGUUCUCUUGCUGCU - 66
Evidence experimental
SOLiD [3]

References

  1. PubMed ID: 16766679
    Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes
    "Watanabe T, Takeda A, Tsukiyama T, Mise K, Okuno T, Sasaki H, Minami N, Imai H"
    "Genes Dev (2006) 20:1732-1743

  2. PubMed ID: 15891114
    Clustering and conservation patterns of human microRNAs
    "Altuvia Y, Landgraf P, Lithwick G, Elefant N, Pfeffer S, Aravin A, Brownstein MJ, Tuschl T, Margalit H"
    "Nucleic Acids Res (2005) 33:2697-2706

  3. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249