Stem-loop mtr-MIR162

Accession

MI0001738

Description

Medicago truncatula mtr-MIR162 precursor miRNA

Literature search

10 open access papers mention mtr-MIR162
(34 sentences)

Sequence

602312 reads, 4849.0 reads per million, 111 experiments

agaugaggugaaguucgucacuGGAUGCAGCGGUUCAUCGAUcuguuccugaauuuuguuugucucguaaaacaaacaugaaucggUCGAUAAACCUCUGCAUCCAGcgcucacuuuccccucu
....((((.(((((..(.(.((((((((((.((((.(((((((.((((.((...(((((((........))))))))).)))).))))))).)))).)))))))))).))..)))))..)))).

Structure

agau    -u     uc u a          C    C       u    c  aau       guc 
    gagg  gaagu  g c cuGGAUGCAG GGUU AUCGAUc guuc ug   uuuguuu   u
    ||||  |||||  | | |||||||||| |||| ||||||| |||| ||   |||||||    
    cucc  uuuca  c g GACCUACGUC CCAA UAGCUgg uaag ac   aaacaaa   c
---u    cc     cu - c          U    A       c    u  ---       aug 

Annotation confidence High

Genome context

chr4: 38145140-38145263 [+]

Mature mtr-miR162-5p

• Accession: MIMAT0054738
• Description: Medicago truncatula mtr-miR162-5p mature miRNA
• Sequence: 23 - GGAUGCAGCGGUUCAUCGAU - 42
• Evidence: experimental ; unknown

Mature mtr-miR162-3p

• Accession: MIMAT0001640
• Description: Medicago truncatula mtr-miR162-3p mature miRNA
• Sequence: 87 - UCGAUAAACCUCUGCAUCCAG - 107
• Evidence: experimental ; Northern [3]

References

1. PubMed ID: 15916721
   Identification and characterization of new plant microRNAs using EST analysis
   "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
   "Cell Res (2005) 15:336-360


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


3. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98