miRBase entry: mtr-MIR160a

Stem-loop mtr-MIR160a


Accession
MI0001739
Description
Medicago truncatula mtr-MIR160a precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
5 open access papers mention mtr-MIR160a
(16 sentences)

Sequence

agauauauauacuaauugcgUGCCUGGCUCCCUGUAUGCCAuuuguagaguucaucaagauguugaugacuuuaaugaauggcgugcgaggagccaugcauguuguguauauuuucuau
(((.((((((((.....((((((.(((((((.(((((((((((((((((((.((((((....))))))))))).)))))))))))))).))))))).)))))).))))))))..)))..

Structure
--   -u        uaauu      C       C              -     u      g 
  aga  auauauac     gcgUGC UGGCUCC UGUAUGCCAuuugu agagu caucaa a
  |||  ||||||||     |||||| ||||||| |||||||||||||| ||||| ||||||  
  ucu  uauaugug     uguacg accgagg gcgugcgguaagua uuuca guaguu u
ua   uu        ----u      u       a              a     -      g 


Annotation confidence Not enough data
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Genome context
contig_112492: 316-434 [+]

Database links

Mature mtr-miR160a

Accession MIMAT0001641
Description Medicago truncatula mtr-miR160a mature miRNA
Sequence 21 - UGCCUGGCUCCCUGUAUGCCA - 41
Evidence experimental
454 [2], Northern [2]

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 19555436
    Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
    "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
    "New Phytol (2009) 184:85-98