Stem-loop mtr-MIR399a

Accession

MI0001749

Description

Medicago truncatula mtr-MIR399a precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

9 open access papers mention mtr-MIR399a
(25 sentences)

Sequence

uccaaguugcaguugaauuacagggugaguucuccauuggcagguagcuagucacuauaugauaugcauugcaaucauuucuuagugugcaaucUGCCAAAGGAGAUUUGCCCAGcgauucuccugcaacucua
....((((((((..(((((.(.((((((((.((((.(((((((((.((....(((((.(((((.(((...))))))))....))))).)).))))))))).)))))))))))).).)))))..))))))))...

Structure

ucca        uu     a a        u    a         a  uagu     ---u     a   a 
    aguugcag  gaauu c gggugagu cucc uuggcaggu gc    cacua    augau ugc  
    ||||||||  ||||| | |||||||| |||| ||||||||| ||    |||||    ||||| ||| u
    ucaacguc  cuuag G CCCGUUUA GAGG AACCGUcua cg    gugau    uacua acg  
-auc        cu     c A        -    A         a  ---u     ucuu     -   u 

Annotation confidence Not enough data

Genome context

chr8: 23163782-23163915 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from mtr-MIR399a

Mature mtr-miR399a

• Accession: MIMAT0001651
• Description: Medicago truncatula mtr-miR399a mature miRNA
• Sequence: 95 - UGCCAAAGGAGAUUUGCCCAG - 115
• Evidence: experimental ; Northern [2]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98