miRBase entry: mtr-MIR399e

Stem-loop mtr-MIR399e


Accession
MI0001750
Description
Medicago truncatula mtr-MIR399e precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
9 open access papers mention mtr-MIR399e
(22 sentences)

Sequence

uccaaguugcaguugaauuacagggugaguucuccauuggcagguagcuagccacuauaugauaugcauugcaaucaucacuuaguguguaaucUGCCAAAGGAGAUUUGCCCAGcgauucucaugcaacucua
....(((((((...(((((.(.((((((((.((((.(((((((((...((..(((((..((((.(((...)))...))))..)))))..))))))))))).)))))))))))).).)))))...)))))))...

Structure
ucca       guu     a a        u    a         agc  gc     ua    --a   a 
    aguugca   gaauu c gggugagu cucc uuggcaggu   ua  cacua  ugau   ugc  
    |||||||   ||||| | |||||||| |||| |||||||||   ||  |||||  ||||   ||| u
    ucaacgu   cuuag G CCCGUUUA GAGG AACCGUcua   au  gugau  acua   acg  
-auc       acu     c A        -    A         ---  gu     uc    cua   u 


Annotation confidence Not enough data
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Genome context
chr8: 23175117-23175250 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mtr-MIR399e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mtr-miR399e

Accession MIMAT0001652
Description Medicago truncatula mtr-miR399e mature miRNA
Sequence 95 - UGCCAAAGGAGAUUUGCCCAG - 115
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13