miRBase entry: mtr-MIR319a

Stem-loop mtr-MIR319a


Accession
MI0001751
Description
Medicago truncatula mtr-MIR319a precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
5 open access papers mention mtr-MIR319a
(22 sentences)

Sequence

auuauuagaaauagaugaagAGAGCUUCCUUCAGUCCACUCauggaaggguaagggguuugaauuaccugcugacucauugauucaaacacaauagacaauuaugggguuaugcuauugugaaugugugaaugaugcaggaggugaauuucuuccuuuucuucuuugcUUGGACUGAAGGGAGCUCCCuuuuucuauuuauaaauua
........(((((((.((((.(((((((((((((((((..((.(((((((.((((((...(((((((((.(((..(((((.((.((..((((((((.((............))))))))))..)).)).)))))..))).))))))..)))))))))))))))).))..))))))))))))))))).)))).)))))))........

Structure
auuauuag       u    A                 CU  u       u      uuu   --      g   ac     g  u  aa        a  auuau 
        aaauaga gaag GAGCUUCCUUCAGUCCA  Ca ggaaggg aagggg   gaa  uuaccu cug  ucauu au ca  cacaauag ca     g
        ||||||| |||| |||||||||||||||||  || ||||||| ||||||   |||  |||||| |||  ||||| || ||  |||||||| ||      
        uuuaucu uuuC CUCGAGGGAAGUCAGGU  gu ucuucuu uuccuu   cuu  agugga gac  aguaa ug gu  guguuauc gu     g
auuaaaua       u    C                 Uc  u       -      ---   ua      g   gu     g  u  aa        -  auugg 


Annotation confidence Not enough data
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Genome context
chr5: 31290518-31290724 [+]

Database links

Mature mtr-miR319a-3p

Accession MIMAT0001653
Description Medicago truncatula mtr-miR319a-3p mature miRNA
Sequence 169 - UUGGACUGAAGGGAGCUCCC - 188
Evidence experimental
454 [2], Illumina [3]

Mature mtr-miR319a-5p

Accession MIMAT0026556
Description Medicago truncatula mtr-miR319a-5p mature miRNA
Sequence 21 - AGAGCUUCCUUCAGUCCACUC - 41
Evidence experimental
Illumina [3]

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 19555436
    Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
    "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
    "New Phytol (2009) 184:85-98

  3. PubMed ID: 23572382
    microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
    "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
    "Planta (2013) 238:91-105