Stem-loop sequence mtr-MIR156a

Accession

MI0001752 (change log)

Previous IDs

mtr-MIR156

Description

Medicago truncatula miR156 stem-loop

Gene family

MIPF0000008; MIR156

Literature search

10 open access papers mention mtr-MIR156a
(77 sentences)

Stem-loop

   agccau  --au   uc  a     c      -        aca    cc     acaaguaacaaaaaacuaccaacuaucaacauuuugucuacuaugaagaaaaucacaugucuagacuauaguuacgaauggaagauacauucaaugauguuuaugaaaauuugagacggucgaggacuauaguuacucuaucgcauacauuuaaugacaaaaaaaauuguguacucuua 
5'       ga    cag  cg gauga agaaga gagagagc   ccca  ugauu                                                                                                                                                                                   u
         ||    |||  || ||||| |||||| ||||||||   ||||  |||||                                                                                                                                                                                    
3'       cu    guc  gu uuacu ucuucu cuuucucg   gggu  acuaa                                                                                                                                                                                   u
   ---ccu  gacc   cc  g     c      u        --a    --     gacaacccuccuuaaggaguguuccauuuugaacugagaaugaauaacguuuuagauuacuaaaaaaaugguacuauaaaugaaaaaaacuuguuaaaaaaaugguacuauaacuuacguuaaaaaauaugacguaaaacuaagaacguaucuuuaacuuacuucuacauaacuuuuau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): contig_50145: 402-861 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001752

Mature sequence mtr-miR156a

• Accession: MIMAT0001654
• Previous IDs: mtr-miR156
• Sequence: 21 - ugacagaagagagagagcaca - 41
• Evidence: experimental; 454 [2], Northern [2]

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:19555436 "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families" Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R New Phytol. 184:85-98(2009).