miRBase entry: sof-MIR159a

Stem-loop sof-MIR159a


Accession
MI0001756
Description
Saccharum officinarum sof-MIR159a precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
7 open access papers mention sof-MIR159a
(39 sentences)

Sequence

ccugaugcuuggauuugaagcggagcuccuaucauuccaaugaagggccguucugaaggguuguuccgcugcucguucaugguucccacuauccuaucucaucauguauguguguauguauuuucgagagggaggagaggagcuagacucucaugguggucgucuuugagauaggcuugugguuugcaugaccgaggagcugcaccguccccuugcuggccgcucUUUGGAUUGAAGGGAGCUCUGcauccugauccauccaucc
...((((..((((((.((.(((((((((((.(((.(((((.((..(((((.....(((((..((.(.(((.((((.(((((....((((...(((((((((..((((((....))))))......((((.((..(((((........))))).......)).)))))))))))))...))))....))))).)))).))).).))....)))))..)))))..)).))))).))).))))))))))).))..))))))..)))).

Structure
ccu    cu      -u  a           a   u     u  ag     uucug     --uu  u c   g    u     guuc    uau         ucauguauguguguauguauuuuc    g  -----ag     gag 
   gaug  uggauu  ga gcggagcuccu uca uccaa ga  ggccg     aaggg    gu c gcu cucg ucaug    ccac   ccuaucuca                        gaga gg       gagag   c
   ||||  ||||||  || ||||||||||| ||| ||||| ||  |||||     |||||    || | ||| |||| |||||    ||||   |||||||||                        |||| ||       |||||    
   cuac  accuag  cu cGUCUCGAGGG AGU AGGUU cu  ccggu     uuccc    ca g cga gagc aguac    ggug   ggauagagu                        uucu cu       cucuc   u
--c    cu      uc  a           A   U     U  cg     ---cg     cugc  c u   g    c     guuu    uuc         ------------------------    g  gguggua     aga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature sof-miR159a

Accession MIMAT0001658
Description Saccharum officinarum sof-miR159a mature miRNA
Sequence 226 - UUUGGAUUGAAGGGAGCUCUG - 246
Evidence not_experimental

References

  1. PubMed ID: 15916721
    Identification and characterization of new plant microRNAs using EST analysis
    "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
    "Cell Res (2005) 15:336-360

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13