Stem-loop sof-MIR167a

Accession

MI0001761

Description

Saccharum officinarum sof-MIR167a precursor miRNA

Gene family

MIPF0000125; MIR167_2

Literature search

7 open access papers mention sof-MIR167a
(32 sentences)

Sequence

aguggugcaccacaaguuggUGAAGCUGCCAGCAUGAUCUGauggugguauauaugaauauaugaugucuuuaccucugaucucucccugacugucaccgauccaugaauccaggaugaggggagggaagaaagagggauaaugagcaucaggucaugcuguaguuucaucugcuggugggagcacau
....((((.((((.(((.(((((((((((.((((((((((((((((.((((((....)))))).)).......(((((..(((((((((...........((((.((....))))))..)))))))))....))))).........))))))))))))))))))))))))).))).))))..))))..

Structure

agug    -a    a   u           C              gugguauauaugaauauaugaugucuuua     --ga         gacugucaccg    a  a 
    gugc  ccac agu ggUGAAGCUGC AGCAUGAUCUGaug                             ccucu    ucucucccu           aucc ug a
    ||||  |||| ||| ||||||||||| ||||||||||||||                             |||||    |||||||||           |||| ||  
    cacg  ggug ucg cuacuuugaug ucguacuggacuac                             ggaga    agggagggg           uagg ac u
--ua    ag    g   u           -              --------------------gaguaauag     aaga         ---------ag    -  c 

Annotation confidence Not enough data

Genome context

Unknown

Mature sof-miR167a

• Accession: MIMAT0001663
• Description: Saccharum officinarum sof-miR167a mature miRNA
• Sequence: 21 - UGAAGCUGCCAGCAUGAUCUG - 41
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13