miRBase entry: gma-MIR156e

Stem-loop gma-MIR156e


Accession
MI0001771
Description
Glycine max gma-MIR156e precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
40 open access papers mention gma-MIR156e
(164 sentences)

Sequence

aggagguguuggugaugcugCUGACAGAAGAUAGAGAGCACugaugaugaaaugcaugaaagggaauggcaucucacuccuuugugcucucuagucuucugucaucauccuucucccuccccuc
.(((((....((.((((....((((((((((((((((((((.((.(((((.((((((........)).)))).))).)).)).))))))))).))))))))))).))))))....)))))....

Structure
---a     uguu  u    cugC           -         u  u  -   a    -  gaa 
    ggagg    gg gaug    UGACAGAAGAU AGAGAGCAC ga ga uga augc au   a
    |||||    || ||||    ||||||||||| ||||||||| || || ||| |||| ||    
    ccucc    uc cuac    acugucuucug ucucucgug uu cu acu uacg ua   g
cucc     cucu  -    ---u           a         u  c  c   c    g  agg 


Annotation confidence Not enough data
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Genome context
chr18: 57144436-57144559 [-]

Database links

Mature gma-miR156e

Accession MIMAT0001673
Description Glycine max gma-miR156e mature miRNA
Sequence 21 - CUGACAGAAGAUAGAGAGCAC - 41
Evidence experimental
Illumina [2]

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562