miRBase entry: gma-MIR319c

Stem-loop gma-MIR319c


Accession
MI0001789
Description
Glycine max gma-MIR319c precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
17 open access papers mention gma-MIR319c
(47 sentences)

Sequence

uugggagggaaagagagugaaggagcuucccucagcccauucauggagauaacgaaagauuggguugcugaauuaacugcuagcucacacauucauucauacaauaguauucaauuaggguaauauugugugaaugaagcgggaguauauaguaucuauauuggaacccucuuucucugugcUUGGACUGAAGGGAGCUCCUucuuuuucugcucccucca
...(((((((.((((((.((((((((((((.((((.(((..((((((((......((((..(((((.((((..((..(((((((((.(...(((((((((((((((.(((((.....))))).)))))))))))))))...)))))...)))))..))..)))))))))))))))))))))..))).)))).)))))))))))).))))))..))))))).

Structure
uug       -a      u            c    c   uu        uaacga    uu     g    au  ac     ---    a aca               g     a 
   ggaggga  agagag gaaggagcuucc ucag cca  cauggaga      aaga  ggguu cuga  ua  ugcua   gcuc c   uucauucauacaaua uauuc a
   |||||||  |||||| |||||||||||| |||| |||  ||||||||      ||||  ||||| ||||  ||  |||||   |||| |   ||||||||||||||| ||||| u
   ccucccu  ucuuuu cuUCCUCGAGGG AGUC GGU  gugucucu      uucu  cccaa gguu  au  augau   ugag g   aaguaaguguguuau auggg u
--a       cg      u            A    A   Uc        ------    --     -    au  cu     aua    - gcg               a     a 


Annotation confidence Not enough data
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Genome context
chr14: 45231920-45232140 [-]

Database links

Mature gma-miR319c

Accession MIMAT0001691
Description Glycine max gma-miR319c mature miRNA
Sequence 183 - UUGGACUGAAGGGAGCUCCU - 202
Evidence experimental
454 [1], Illumina [3-4]

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 18402695
    Novel and nodulation-regulated microRNAs in soybean roots
    Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
    BMC Genomics (2008) 9:160

  3. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  4. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562