miRBase entry: gma-MIR169a

Stem-loop gma-MIR169a


Accession
MI0001791
Description
Glycine max gma-MIR169a precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
26 open access papers mention gma-MIR169a
(106 sentences)

Sequence

aagaggaagagagagugaugCAGCCAAGGAUGACUUGCCGGcguuauuauuugcucauguucaugcucaccgguuuccuugccggcaaguuguguuuggcuauguuuugcucucuucuucu
.((((((((((((...((((.(((((((.((((((((((((((.........(((..((........))..))).....)))))))))))))).))))))).))))...))))))))))))

Structure
a            agu    C       G              uuauuauuu   ca  uuc 
 agaggaagagag   gaug AGCCAAG AUGACUUGCCGGcg         gcu  ug   a
 ||||||||||||   |||| ||||||| ||||||||||||||         |||  ||    
 ucuucuucucuc   uugu ucgguuu uguugaacggccgu         ugg  ac   u
-            guu    a       g              ----uccuu   cc  ucg 


Annotation confidence Not enough data
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Genome context
chr9: 38336014-38336134 [+]

Database links

Mature gma-miR169a

Accession MIMAT0001693
Description Glycine max gma-miR169a mature miRNA
Sequence 21 - CAGCCAAGGAUGACUUGCCGG - 41
Evidence experimental
454 [1,3], Northern [1]

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 18402695
    Novel and nodulation-regulated microRNAs in soybean roots
    Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
    BMC Genomics (2008) 9:160

  3. PubMed ID: 21504877
    MicroRNAs in the shoot apical meristem of soybean
    "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
    "J Exp Bot (2011) 62:2495-2506