miRBase entry: zma-MIR171d

Stem-loop zma-MIR171d


Accession
MI0001792
Description
Zea mays zma-MIR171d precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
19 open access papers mention zma-MIR171d
(51 sentences)

Sequence

1858 reads, 4835 reads per million, 112 experiments
agaaauggaaguguaacuauggUGUUGGCUCGGCUCACUCAGAaguugaagccgaauccaaaugguagcugccggcguuucUGAUUGAGCCGUGCCAAUAUCucaguacucuuucaugcug
....(((((((.(((.((..(((((((((.(((((((.((((((((((.(((.....((....))..)))..))))..)))))).))))))).)))))))))..))))).)))))))....

Structure
agaa       u   a  au         U       C      --    -a   cgaau  a 
    auggaag gua cu  ggUGUUGGC CGGCUCA UCAGAa  guug  agc     cc a
    ||||||| ||| ||  ||||||||| ||||||| ||||||  ||||  |||     ||  
    uacuuuc cau ga  CUAUAACCG GCCGAGU AGUcuu  cggc  ucg     gg a
gucg       u   -  cu         U       U      ug    cg   ---au  u 


Annotation confidence High
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Genome context
chr9: 128212960-128213080 [+]

Database links

Mature zma-miR171d-5p

Accession MIMAT0015160
Description Zea mays zma-miR171d-5p mature miRNA
Sequence 23 - UGUUGGCUCGGCUCACUCAGA - 43
Evidence experimental
Illumina [2]

Mature zma-miR171d-3p

Accession MIMAT0001694
Description Zea mays zma-miR171d-3p mature miRNA
Sequence 82 - UGAUUGAGCCGUGCCAAUAUC - 102
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13