miRBase entry: zma-MIR171f

Stem-loop zma-MIR171f


Accession
MI0001793
Description
Zea mays zma-MIR171f precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
21 open access papers mention zma-MIR171f
(58 sentences)

Sequence

1696 reads, 4292 reads per million, 124 experiments
uugguuguuggcugagagagugCGAUGUUGGCAUGGCUCAAUCaacucgccggccgcggguggcuuauagcuuaauucugcgcauucgaucgaggugcgggcgcaguguuuaauugaUUGAGCCGUGCCAAUAUCACAaccuucucuagccuaua
.........(((((((((.(((.(((((((((((((((((((((((((((.....))))))((((...)))).(((.((((((..(((..(...)..))))))))).)))....))))))))))))))))))))).).)).))))).))))....

Structure
uugguuguu    -     a  - C                     acucgccggccgcggguggcuuauagcuu   u      au   au g 
         ggcu gagag gu g GAUGUUGGCAUGGCUCAAUCa                             aau cugcgc  ucg  c  
         |||| ||||| || | |||||||||||||||||||||                             ||| ||||||  |||  | a
         ccga cucuu ca C CUAUAACCGUGCCGAGUUagu                             uug gacgcg  ggc  g  
-----auau    u     c  A A                     -------------------------uaau   u      --   gu g 


Annotation confidence Low
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Genome context
chr5: 8896283-8896437 [-]

Database links

Mature zma-miR171f-5p

Accession MIMAT0015161
Description Zea mays zma-miR171f-5p mature miRNA
Sequence 23 - CGAUGUUGGCAUGGCUCAAUC - 43
Evidence experimental
Illumina [3]

Mature zma-miR171f-3p

Accession MIMAT0001695
Description Zea mays zma-miR171f-3p mature miRNA
Sequence 118 - UUGAGCCGUGCCAAUAUCACA - 138
Evidence experimental
Illumina [3]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. PubMed ID: 15916721
    Identification and characterization of new plant microRNAs using EST analysis
    "Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA"
    "Cell Res (2005) 15:336-360

  3. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13