miRBase entry: zma-MIR394b

Stem-loop zma-MIR394b


Accession
MI0001795
Description
Zea mays zma-MIR394b precursor miRNA
Gene family
MIPF0000100; MIR394

Literature search
8 open access papers mention zma-MIR394b
(16 sentences)

Sequence

547 reads, 3217 reads per million, 7 experiments
uggcgcuuacugagaguuccUUGGCAUUCUGUCCACCUCCcuucuugacgaucuugcagaaaguuugcuuuuuuuguuuguuuggAGGUGGGCAUACUGCCAAUGgagcugcguaggccucc
.((.((((((....((((((((((((...(((((((((((......(((((....(((((...))))).....))))).....)))))))))))...)))))).))))))..))))))))..

Structure
-u  c      ugag      -      UUC           cuucuu     -ucuu     a 
  gg gcuuac    aguucc UUGGCA   UGUCCACCUCC      gacga     gcaga  
  || ||||||    |||||| ||||||   |||||||||||      |||||     ||||| a
  uc cggaug    ucgagG AACCGU   ACGGGUGGAgg      uuguu     cguuu  
cc  -      --cg      U      CAU           -uuugu     uuuuu     g 


Annotation confidence Not enough data
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Genome context
chr4: 157728375-157728496 [+]

Database links

Mature zma-miR394b-5p

Accession MIMAT0001697
Description Zea mays zma-miR394b-5p mature miRNA
Sequence 21 - UUGGCAUUCUGUCCACCUCC - 40
Evidence experimental
Illumina [2]
Database links

Mature zma-miR394b-3p

Accession MIMAT0015163
Description Zea mays zma-miR394b-3p mature miRNA
Sequence 86 - AGGUGGGCAUACUGCCAAUG - 105
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13