miRBase entry: zma-MIR395a

Stem-loop zma-MIR395a


Accession
MI0001799
Description
Zea mays zma-MIR395a precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
19 open access papers mention zma-MIR395a
(93 sentences)

Sequence

115 reads, 1332 reads per million, 113 experiments
uauugguugguugucaccuggaGUUCUCCUCAAACCACUUCAGUUgcugcaccuagcuaguuuaauggcacugugcuugcgugcaagcggccggagcuguguguagcuaGUGAAGUGUUUGGGGGAACUCugggugucaaucagcaauu
.....((((((((.(((((((((((((((.(((((.((((((.(.(((((((.(((((.......((((....((((((....)))))))))).))))).))))))).).)))))))))))))))))))))))))).))))))))....

Structure
uauug        u               U     C      G U       c     aguuuaa    acug      c 
     guugguug caccuggaGUUCUCC CAAAC ACUUCA U gcugcac uagcu       uggc    ugcuug g
     |||||||| ||||||||||||||| ||||| |||||| | ||||||| |||||       ||||    ||||||  
     cgacuaac guggguCUCAAGGGG GUUUG UGAAGU a cgaugug gucga       gccg    gcgaac u
-uuaa        u               -     -      G u       u     ------g    ----      g 


Annotation confidence Not enough data
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Genome context
chr2: 6288043-6288191 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from zma-MIR395a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR395a-5p

Accession MIMAT0015166
Description Zea mays zma-miR395a-5p mature miRNA
Sequence 23 - GUUCUCCUCAAACCACUUCAGUU - 45
Evidence experimental
Illumina [2]

Mature zma-miR395a-3p

Accession MIMAT0001701
Description Zea mays zma-miR395a-3p mature miRNA
Sequence 110 - GUGAAGUGUUUGGGGGAACUC - 130
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13