miRBase entry: zma-MIR396b

Stem-loop zma-MIR396b


Accession
MI0001800
Description
Zea mays zma-MIR396b precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
24 open access papers mention zma-MIR396b
(80 sentences)

Sequence

759 reads, 2076 reads per million, 4 experiments
agauggccuucuuugugaucUUCCACAGCUUUCUUGAACUGcaucucucagaggagcggcagcuucaacuccuccacccgcaucagcaggugcaugcaGUUCAAUAAAGCUGUGGGAAAcugcagagagaggccag
...((((((((((((((...((((((((((((.(((((((((((......((((((..(......)..))))))((((.((....)).)))).))))))))))).))))))))))))...)))))))).)))))).

Structure
aga      -        auc            C           -------------cucuca      cg ca 
   uggccu ucuuugug   UUCCACAGCUUU UUGAACUGcau                   gaggag  g  g
   |||||| ||||||||   |||||||||||| |||||||||||                   ||||||  |   
   accgga agagacgu   AGGGUGUCGAAA AACUUGacgua                   cuccuc  c  c
--g      g        cAA            U           cguggacgacuacgcccac      aa uu 


Annotation confidence Not enough data
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Genome context
chr9: 15122740-15122875 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from zma-MIR396b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR396b-5p

Accession MIMAT0001702
Description Zea mays zma-miR396b-5p mature miRNA
Sequence 21 - UUCCACAGCUUUCUUGAACUG - 41
Evidence experimental
Illumina [2]
Database links

Mature zma-miR396b-3p

Accession MIMAT0015167
Description Zea mays zma-miR396b-3p mature miRNA
Sequence 99 - GUUCAAUAAAGCUGUGGGAAA - 119
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13