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miRBase |
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Stem-loop sequence zma-MIR396b |
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Accession | MI0001800 (change log) | |||||
Description | Zea mays miR396b stem-loop | |||||
Gene family | MIPF0000047; MIR396 | |||||
Literature search |
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24 open access papers mention zma-MIR396b | |||||
Stem-loop |
aga - ga c c cucucagaggagcggcagcuuca 5' uggccu ucuuugu u uuccacagcuuu uugaacugcau a |||||| ||||||| | |||||||||||| ||||||||||| c 3' accgga agagacg a agggugucgaaa aacuugacgua u --g g uc a u cguggacgacuacgcccaccucc |
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Deep sequencing |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence zma-miR396b-5p |
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Accession | MIMAT0001702 |
Previous IDs | zma-miR396b |
Sequence |
21 - uuccacagcuuucuugaacug - 41 |
Deep sequencing | 1440 reads, 138 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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Mature sequence zma-miR396b-3p |
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Accession | MIMAT0015167 |
Previous IDs | zma-miR396b* |
Sequence |
99 - guucaauaaagcugugggaaa - 119 |
Deep sequencing | 316 reads, 38 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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References |
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1 |
"Conservation and divergence of microRNA families in plants"
http://genomebiology.com/2005/6/11/p13 (2005).
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2 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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