Stem-loop zma-MIR399c

Accession

MI0001803

Description

Zea mays zma-MIR399c precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

23 open access papers mention zma-MIR399c
(74 sentences)

Sequence

302 reads, 1112 reads per million, 5 experiments

ugcuugcugagcaugaauuacaGGGUACGUCUCCUUUGGCACAgcagaaugcacacaucaucagucgagagaguaagcucgcugcgugcucgccggccugggagcggaagucgcaggccaaauggcggcggugcagaugcaugaacagcagcugccguauauaugcgUGCCAAAGGAGAAUUGCCCUGcgauucuaggcucagcgau
...(((((((((..(((((.(((((((..(((((((((((((.(((..((((.........(((.((((........)))))))..(((.((((((((((.((.......)).))))))....)))))))(.((((.(((.......))).)))))))))...))))))))))))))))..))))))).)))))...))))))))).

Structure

ugc         -au     a       CG             A   -ga    acacaucaucagucgagagaguaagcucgcugcg   u    ----      g  gc 
   uugcugagc   gaauu caGGGUA  UCUCCUUUGGCAC gca   augc                                  ugc cgcc    ggccug ga  g
   |||||||||   ||||| |||||||  ||||||||||||| |||   ||||                                  ||| ||||    |||||| ||  g
   agcgacucg   cuuag GUCCCGU  AGAGGAAACCGUg cgu   uaug                                  gcg gcgg    ccggac cu  a
--u         gau     c       UA             -   aua    --------ccgucgacgacaaguacguagacgug   -    uaaa      g  ga 

Annotation confidence Not enough data

Genome context

chr6: 163867932-163868138 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR399c

Mature zma-miR399c-5p

• Accession: MIMAT0015170
• Description: Zea mays zma-miR399c-5p mature miRNA
• Sequence: 23 - GGGUACGUCUCCUUUGGCACA - 43
• Evidence: experimental ; Illumina [2]

Mature zma-miR399c-3p

• Accession: MIMAT0001705
• Description: Zea mays zma-miR399c-3p mature miRNA
• Sequence: 168 - UGCCAAAGGAGAAUUGCCCUG - 188
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13