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miRBase |
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Stem-loop sequence zma-MIR399f |
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Accession | MI0001807 (change log) | |||||
Description | Zea mays miR399f stem-loop | |||||
Gene family | MIPF0000015; MIR399 | |||||
Literature search |
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22 open access papers mention zma-MIR399f | |||||
Stem-loop |
cagga cc c u c c ---au ga 5' ugugca ug auuuc gggcaa uu uccuuuggcag gcgc g |||||| || ||||| |||||| || ||||||||||| |||| 3' acacgu ac uaagg cccguu aa aggaaaccguc cgug a -acga cu u c u - gucac ua |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence zma-miR399f-5p |
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Accession | MIMAT0015174 |
Previous IDs | zma-miR399f* |
Sequence |
23 - gggcaacuucuccuuuggcaga - 44 |
Deep sequencing | 34 reads, 2 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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Mature sequence zma-miR399f-3p |
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Accession | MIMAT0001709 |
Previous IDs | zma-miR399f |
Sequence |
66 - ugccaaaggaaauuugccccg - 86 |
Deep sequencing | 67 reads, 1 experiments |
Evidence | experimental; Illumina [2] |
Database links |
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References |
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1 |
"Conservation and divergence of microRNA families in plants"
http://genomebiology.com/2005/6/11/p13 (2005).
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2 |
PMID:19936050
"A genome-wide characterization of microRNA genes in maize"
PLoS Genet. 5:e1000716(2009).
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