miRBase entry: zma-MIR159b

Stem-loop zma-MIR159b


Accession
MI0001810
Description
Zea mays zma-MIR159b precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
31 open access papers mention zma-MIR159b
(164 sentences)

Sequence

5772 reads, 27471 reads per million, 26 experiments
uagacggucuggucuuaaggcgGUGCUCCCUUCAAACCAAUAAacggucgaucugaugggugguacagcugcucguucaugguucccacugucccaucucaucagagagagagagagaugcuugagaugggcuugugguuugcaugaccgaggagcugcacguccccuucguugaccgcugUUUGGAUUGAAGGGAGCUCUGcaucuuggucccaagacuu
.....(((((((..(((((((((.(((((((((((.((((..(.((((((((..((.(((..((.(((((.((((.(((((....((((...(((((((((.((..............))..)))))))))...))))....))))).)))).))))).))...))).)))))))))).)..)))).))))))))))).))))..)))))..)).))))).

Structure
uagac     -  uc     --    U           A    UA a        cu  u   -ug  a     g    u     guuc    ugu         -u  gagaga 
     ggucu gg  uuaag  gcgG GCUCCCUUCAA CCAA  A cggucgau  ga ggg   gu cagcu cucg ucaug    ccac   cccaucuca  ca      g
     ||||| ||  |||||  |||| ||||||||||| ||||  | ||||||||  || |||   || ||||| |||| |||||    ||||   |||||||||  ||       
     ucaga cc  gguuc  cGUC CGAGGGAAGUU GGUU  u gccaguug  cu ccc   ca gucga gagc aguac    ggug   ggguagagu  gu      a
----u     a  cu     ua    U           A    Ug c        --  u   cug  c     g    c     guuu    uuc         uc  agagag 


Annotation confidence Not enough data
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Genome context
chr8: 10950933-10951153 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from zma-MIR159b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature zma-miR159b-5p

Accession MIMAT0015177
Description Zea mays zma-miR159b-5p mature miRNA
Sequence 23 - GUGCUCCCUUCAAACCAAUAA - 43
Evidence experimental
Illumina [2]

Mature zma-miR159b-3p

Accession MIMAT0001712
Description Zea mays zma-miR159b-3p mature miRNA
Sequence 182 - UUUGGAUUGAAGGGAGCUCUG - 202
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716

  2. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13