Stem-loop zma-MIR319a

Accession

MI0001813

Description

Zea mays zma-MIR319a precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

22 open access papers mention zma-MIR319a
(74 sentences)

Sequence

2123 reads, 15703 reads per million, 15 experiments

gguucauguuuucucuggaagaGAGCUCUCUUCAGUCCACUCugaaauggcuguaggguuucauuagcugccgacucauccauucaccugccaagaaccauggacaggucuggucuugguagccgaguggguggcgcgggagcuaaaaucaagcucuacgcuguuuguggUUGGACUGAAGGGUGCUCCCuuuuguuugcucaaacgcu
................(((((.((((.((((((((((((.((..(((((((.(((((((((..((((((.(((..((((((((((..(((((((((.(((.((.....))))))))))))))..))))))))))..))).))))))....))))))))))))))))..)).)))))))))))).)))).)))))....((......)).

Structure

gguucauguuuucucu     a    U            C  ug       u         --ca      g   ac          ac         a   u  a 
                ggaag GAGC CUCUUCAGUCCA UC  aaauggc guaggguuu    uuagcu ccg  ucauccauuc  cugccaaga cca gg c
                ||||| |||| |||||||||||| ||  ||||||| |||||||||    |||||| |||  ||||||||||  ||||||||| ||| || a
                uuuuC CUCG GGGAAGUCAGGU gg  uuugucg caucucgaa    aaucga ggc  ggugggugag  gaugguucu ggu cu g
-ucgcaaacucguuug     C    U            U  ug       -         cuaa      g   gc          cc         -   -  g 

Annotation confidence Not enough data

Genome context

chr3: 215788718-215788926 [+]

Mature zma-miR319a-5p

• Accession: MIMAT0015180
• Description: Zea mays zma-miR319a-5p mature miRNA
• Sequence: 23 - GAGCUCUCUUCAGUCCACUC - 42
• Evidence: experimental ; Illumina [2]

Mature zma-miR319a-3p

• Accession: MIMAT0001715
• Description: Zea mays zma-miR319a-3p mature miRNA
• Sequence: 171 - UUGGACUGAAGGGUGCUCCC - 190
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13